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DB built by FlyBase

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Gene: gish FBgn0250823

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Description

gilgamesh

Gene Synonyms

Location

Primary_assembly 3R: 16,272,452-16,304,768 forward strand.

BDGP6.32:AE014297.3

About this gene

This gene has 16 transcripts (splice variants), 777 orthologues and 11 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
gish-RL	FBtr0330041	2945	537aa	FBpp0303074	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KHL4 Q6NNA8	NM_001275695 NM_001275695.1 NP_001262624 NP_001262624.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
gish-RM	FBtr0334606	5623	468aa	FBpp0306673	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q86BR9	NM_001014626.4 NM_001275696 NM_001275696.1 NM_169712.4 NM_169713.5 NP_001014626.1 NP_001262625 NP_001262625.1 NP_732124.3 NP_732125.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
gish-RJ	FBtr0305071	3386	521aa	FBpp0293608	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K697	NM_001260208 NM_001260208.2 NP_001247137 NP_001247137.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
gish-RK	FBtr0305072	3311	496aa	FBpp0293609	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K7C4	NM_001260209 NM_001260209.2 NP_001247138 NP_001247138.1	-
gish-RI	FBtr0301304	3245	474aa	FBpp0290519	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q86NK8	NM_001170157 NM_001170157.2 NP_001163628 NP_001163628.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
gish-RB	FBtr0083262	3227	468aa	FBpp0082716	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q86BR9	NM_001014626.4 NM_001275696.1 NM_169712 NM_169712.4 NM_169713.5 NP_001014626.1 NP_001262625.1 NP_732124 NP_732124.3 NP_732125.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
gish-RE	FBtr0083265	3212	463aa	FBpp0082719	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q59DW8	NM_176506 NM_176506.4 NP_788683 NP_788683.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
gish-RH	FBtr0100333	3149	468aa	FBpp0099738	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q86BR9	NM_001014626 NM_001014626.4 NM_001275696.1 NM_169712.4 NM_169713.5 NP_001014626 NP_001014626.1 NP_001262625.1 NP_732124.3 NP_732125.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
gish-RD	FBtr0083261	2945	468aa	FBpp0082715	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q86BR9	NM_001014626.4 NM_001275696.1 NM_169712.4 NM_169713 NM_169713.5 NP_001014626.1 NP_001262625.1 NP_732124.3 NP_732125 NP_732125.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
gish-RN	FBtr0479900	2755	448aa	FBpp0428233	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6H2EFT7	-	-
gish-RA	FBtr0083263	2677	422aa	FBpp0082717	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VEX2	NM_169711 NM_169711.5 NP_732123 NP_732123.1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
gish-RC	FBtr0083264	2330	427aa	FBpp0082718	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8INB6	NM_080202 NM_080202.6 NP_524941 NP_524941.3	-
gish-RF	FBtr0100331	2171	358aa	FBpp0099736	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IHB0	NM_001014628 NM_001014628.3 NP_001014628 NP_001014628.1	-
gish-RO	FBtr0479901	1968	399aa	FBpp0428234	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6H2EGC1	-	-
gish-RG	FBtr0100332	1959	476aa	FBpp0099737	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q4AB31	NM_001014627 NM_001014627.2 NP_001014627 NP_001014627.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
gish-RP	FBtr0479902	1788	339aa	FBpp0428235	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6H2EFD0	-	-

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Summary

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Gene-based displays