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Summary
- Splice variants
- Transcript comparison
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DB built by FlyBase

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Gene: CG2016 FBgn0250839

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Gene Synonyms

Location

Primary_assembly 3R: 4,956,999-4,961,351 reverse strand.

BDGP6.46:AE014297.3

About this gene

This gene has 4 transcripts (splice variants), 38 orthologues and 24 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG2016-RE	FBtr0335404	888	254aa	FBpp0307387	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KF22	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
CG2016-RD	FBtr0305964	1211	249aa	FBpp0297106	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VN72	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
CG2016-RC	FBtr0305963	1099	183aa	FBpp0297105	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3DMT7	-	-
CG2016-RB	FBtr0078847	873	249aa	FBpp0078488	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G7H803 Q8SYV0 Q9VN72	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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