Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
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- Gene tree
- Gene gain/loss tree
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Pan-taxonomic Compara
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- Orthologues
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Genetic Variation
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DB built by FlyBase

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Gene: CG42237 FBgn0250862

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Location

Primary_assembly X: 13,115,131-13,123,066 forward strand.

BDGP6.32:AE014298.5

About this gene

This gene has 2 transcripts (splice variants), 118 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG42237-RA	FBtr0073722	1438	363aa	FBpp0073553	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VYG9	NM_132627 NM_132627.2 NP_572855 NP_572855.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG42237-RB	FBtr0340302	1512	309aa	FBpp0309263	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8SZ42 X2JBI9	NM_001298256 NM_001298256.1 NP_001285185 NP_001285185.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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Gene-based displays