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- Splice variants
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DB built by FlyBase

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Gene: OtopLa FBgn0259994

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Description

Otopetrin-like a

Gene Synonyms

Location

Primary_assembly X: 5,625,676-5,648,487 reverse strand.

BDGP6.32:AE014298.5

About this gene

This gene has 6 transcripts (splice variants), 170 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
OtopLa-RC	FBtr0300465	4253	991aa	FBpp0289692	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B3DNA0 E1JJE6	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
OtopLa-RE	FBtr0310286	6757	979aa	FBpp0301969	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PJ56	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
OtopLa-RD	FBtr0310285	5914	977aa	FBpp0301968	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PGQ4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
OtopLa-RF	FBtr0336689	4355	917aa	FBpp0307670	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A9YIR6 M9PDU2	-	-
OtopLa-RA	FBtr0300466	4210	916aa	FBpp0289693	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A9YIR6 A9YIR8 A9YIR9 B3DNA0 D1Z3A7 Q9W4A6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
OtopLa-RG	FBtr0336690	4154	958aa	FBpp0307671	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PGH2 Q4V485	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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