Otopetrin-like a
Primary_assembly X: 5,625,676-5,648,487 reverse strand.
BDGP6.32:AE014298.5
This gene has 6 transcripts (splice variants), 144 orthologues and 2 paralogues.
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | UniProt | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|
| OtopLa-RC | FBtr0300465 | 4253 | 991aa | FBpp0289692 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B3DNA0 E1JJE6 | NM_001169205 NM_001169205.2 NP_001162676 NP_001162676.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| OtopLa-RE | FBtr0310286 | 6757 | 979aa | FBpp0301969 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | M9PJ56 | NM_001272326 NM_001272326.1 NP_001259255 NP_001259255.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| OtopLa-RD | FBtr0310285 | 5914 | 977aa | FBpp0301968 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | M9PGQ4 | NM_001272325 NM_001272325.1 NP_001259254 NP_001259254.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| OtopLa-RF | FBtr0336689 | 4355 | 917aa | FBpp0307670 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A9YIR6 M9PDU2 | NM_001272327 NM_001272327.1 NP_001259256 NP_001259256.1 | - |
| OtopLa-RA | FBtr0300466 | 4210 | 916aa | FBpp0289693 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A9YIR6 A9YIR8 A9YIR9 B3DNA0 D1Z3A7 Q9W4A6 | NM_132009 NM_132009.4 NP_572237 NP_572237.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| OtopLa-RG | FBtr0336690 | 4154 | 958aa | FBpp0307671 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | M9PGH2 Q4V485 | NM_001272328 NM_001272328.1 NP_001259257 NP_001259257.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
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