Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
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Literature
Metazoan Compara
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Pan-taxonomic Compara
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DB built by FlyBase

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Gene: CG42541 FBgn0260658

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Location

Primary_assembly X: 3,891,497-3,930,578 reverse strand.

BDGP6.32:AE014298.5

About this gene

This gene has 4 transcripts (splice variants) and 10 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG42541-RE	FBtr0332388	9704	1417aa	FBpp0304662	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PGL8	NM_001272295 NM_001272295.1 NP_001259224 NP_001259224.1	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2
CG42541-RD	FBtr0301100	8817	1417aa	FBpp0290322	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q2PE29	NM_001038740 NM_001038740.3 NP_001033829 NP_001033829.2	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2
CG42541-RF	FBtr0332389	8763	1399aa	FBpp0304663	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PJ04 Q6NNZ8 Q8MR38 Q8MS07	NM_001272296 NM_001272296.1 NP_001259225 NP_001259225.1	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2
CG42541-RC	FBtr0301099	6157	1418aa	FBpp0290321	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KVX6	NM_206622 NM_206622.4 NP_996345 NP_996345.3	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS P5

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Summary

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Gene-based displays