Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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- Orthologues
Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
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External references
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ID History
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DB built by FlyBase

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Gene: CG12213 FBgn0260742

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Location

Primary_assembly 3R: 11,964,674-11,967,691 reverse strand.

BDGP6.32:AE014297.3

About this gene

This gene has 4 transcripts (splice variants) and 21 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG12213-RC	FBtr0113223	2607	581aa	FBpp0112135	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8JQY2	NM_001104284 NM_001104284.2 NP_001097754 NP_001097754.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG12213-RD	FBtr0334155	2640	514aa	FBpp0306272	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8INJ4	NM_001275560 NM_001275560.1 NM_141876.4 NP_001262489 NP_001262489.1 NP_650133.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG12213-RE	FBtr0334156	2439	525aa	FBpp0306273	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VGF8	NM_169442 NM_169442.3 NP_731654 NP_731654.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG12213-RB	FBtr0082510	1714	514aa	FBpp0081984	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8A412 Q8INJ4	NM_001275560.1 NM_141876 NM_141876.4 NP_001262489.1 NP_650133 NP_650133.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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Gene-based displays