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- Splice variants
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DB built by FlyBase

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Gene: nej FBgn0261617

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Description

nejire

Gene Synonyms

Location

Primary_assembly X: 9,665,442-9,687,066 reverse strand.

BDGP6.46:AE014298.5

About this gene

This gene has 4 transcripts (splice variants) and 109 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
nej-RC	FBtr0302722	11704	3282aa	FBpp0291862	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A9YKH4 M9MS40	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
nej-RD	FBtr0302723	15729	3276aa	FBpp0291863	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W321	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
nej-RE	FBtr0333521	15400	3266aa	FBpp0305701	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PH39	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
nej-RB	FBtr0071402	11733	3276aa	FBpp0071337	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A9YKH0 A9YKH7 A9YKI3 F6J532 O01368 Q95TP4 Q9W321	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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