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DB built by FlyBase

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Gene: tinc FBgn0261649

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Description

tincar

Gene Synonyms

Location

Primary_assembly 3R: 17,811,541-17,872,507 forward strand.

BDGP6.46:AE014297.3

About this gene

This gene has 5 transcripts (splice variants) and 17 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
tinc-RA	FBtr0089771	7103	1513aa	FBpp0088712	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KGD5 Q86B91	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
tinc-RF	FBtr0337038	7061	1513aa	FBpp0307967	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KGD5 Q86B91	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
tinc-RB	FBtr0089772	7048	992aa	FBpp0088713	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
tinc-RG	FBtr0337039	7016	1513aa	FBpp0307968	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KGD5 Q86B91	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
tinc-RE	FBtr0304905	7013	1513aa	FBpp0293444	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KGD5 Q86B91	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,

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Summary

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