Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
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Literature
Metazoan Compara
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- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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- GO: Cellular component
- GO: Molecular function
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Phenotypes
Genetic Variation
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DB built by FlyBase

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Gene: CG42733 FBgn0261686

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Gene Synonyms

Location

Primary_assembly 2R: 10,356,171-10,356,800 reverse strand.

BDGP6.46:AE013599.5

About this gene

This gene has 3 transcripts (splice variants) and 1 orthologue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG42733-RD	FBtr0303086	519	97aa	FBpp0292205	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4JCS8	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
CG42733-RC	FBtr0303084	630	73aa	FBpp0292203	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q3YMS8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG42733-RB	FBtr0303085	571	73aa	FBpp0292204	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q3YMS8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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