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DB built by FlyBase

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Gene: Trf2 FBgn0261793

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Description

TATA box binding protein-related factor 2

Gene Synonyms

Location

Primary_assembly X: 8,409,272-8,433,011 forward strand.

BDGP6.46:AE014298.5

About this gene

This gene has 6 transcripts (splice variants), 68 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Trf2-RF	FBtr0300577	9866	1715aa	FBpp0289804	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q07DP5	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Trf2-RH	FBtr0330106	10041	632aa	FBpp0303139	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A9YJX8 B4YWI1 F6J4J3 F6JBM5 F6JBM9 F6JBN0 Q8T052	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Trf2-RE	FBtr0112927	7131	1715aa	FBpp0111840	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q07DP5	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Trf2-RI	FBtr0333750	7034	1714aa	FBpp0305892	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PHD8 Q9XZD9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Trf2-RJ	FBtr0333811	6934	632aa	FBpp0305945	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8T052	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Trf2-RG	FBtr0330105	6840	1715aa	FBpp0303138	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0F6VY44 A0A0F6YEH2 Q07DP5 Q7KA83	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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