Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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- Orthologues
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Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Regulation
External references
Supporting evidence
ID History
- Gene history

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DB built by FlyBase

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Gene: scaf6 FBgn0261872

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Description

SR-related CTD associated factor 6

Gene Synonyms

Location

Primary_assembly 3L: 17,036,859-17,042,574 reverse strand.

BDGP6.32:AE014296.5

About this gene

This gene has 3 transcripts (splice variants) and 173 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
scaf6-RA	FBtr0091474	3071	960aa	FBpp0075048	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q59E33 Q7K2G6 Q8I9J8	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
scaf6-RE	FBtr0345067	2998	251aa	FBpp0311297	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A023GQ04	-	-
scaf6-RC	FBtr0301554	1415	182aa	FBpp0290769	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q86MQ9	-	-

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Summary

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