Summary
- Splice variants
- Transcript comparison
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- Orthologues
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Pan-taxonomic Compara
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- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
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DB built by FlyBase

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Gene: CG43078 FBgn0262508

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Gene Synonyms

Location

Primary_assembly 3L: 8,576,808-8,599,617 forward strand.

BDGP6.46:AE014296.5

About this gene

This gene has 13 transcripts (splice variants) and 1 orthologue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG43078-RH	FBtr0304813	8664	2540aa	FBpp0293353	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NFP8 Q7YTY0	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
CG43078-RN	FBtr0340707	10607	2509aa	FBpp0309526	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NF47	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG43078-RJ	FBtr0304815	8673	2509aa	FBpp0293355	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NF47	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG43078-RK	FBtr0333111	8538	2464aa	FBpp0305322	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PET1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG43078-RL	FBtr0333112	8513	2514aa	FBpp0305323	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PHT9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG43078-RG	FBtr0304812	8498	2455aa	FBpp0293352	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NE59	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG43078-RI	FBtr0304814	8316	1957aa	FBpp0293354	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9ND64 Q8MZ46	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG43078-RM	FBtr0333113	8255	2428aa	FBpp0305324	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PBX1 Q95RZ5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG43078-RD	FBtr0304810	6099	984aa	FBpp0293350	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5BHY8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG43078-RB	FBtr0304809	5763	1709aa	FBpp0293349	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VSM0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG43078-RE	FBtr0304811	5675	1678aa	FBpp0293351	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JI71	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG43078-RA	FBtr0304807	5320	1653aa	FBpp0293347	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VSM1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG43078-RC	FBtr0304808	5318	1126aa	FBpp0293348	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VSM2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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