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DB built by FlyBase

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Gene: nsl1 FBgn0262527

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Description

non-specific lethal 1

Gene Synonyms

Location

Primary_assembly 3R: 15,793,782-15,802,102 forward strand.

BDGP6.32:AE014297.3

About this gene

This gene has 12 transcripts (splice variants) and 112 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
nsl1-RM	FBtr0309861	5262	1570aa	FBpp0301595	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7VEK1 B7VEK5 E2QD16	NM_169672 NM_169672.4 NP_732069 NP_732069.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
nsl1-RJ	FBtr0301732	6120	936aa	FBpp0290946	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JIM1	NM_001170153 NM_001170153.3 NP_001163624 NP_001163624.1	-
nsl1-RE	FBtr0301727	6051	1549aa	FBpp0290941	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JIM0	NM_001170151 NM_001170151.3 NM_001275684.1 NP_001163622 NP_001163622.1 NP_001262613.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
nsl1-RP	FBtr0334592	5981	1549aa	FBpp0306659	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JIM0	NM_001170151.3 NM_001275684 NM_001275684.1 NP_001163622.1 NP_001262613 NP_001262613.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
nsl1-RH	FBtr0301730	5907	1550aa	FBpp0290944	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V2Z1	NM_001170150.3 NM_001170152 NM_001170152.2 NM_169673.3 NP_001163621.1 NP_001163623 NP_001163623.1 NP_732070.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
nsl1-RO	FBtr0309863	5906	1551aa	FBpp0301597	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K690	NM_001260197 NM_001260197.2 NP_001247126 NP_001247126.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
nsl1-RF	FBtr0301728	5877	1548aa	FBpp0290942	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B5RJH7 Q0KI68	NM_142235 NM_142235.4 NP_650492 NP_650492.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
nsl1-RL	FBtr0309860	5874	981aa	FBpp0301594	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K6Z4	NM_001260195 NM_001260195.2 NP_001247124 NP_001247124.1	-
nsl1-RI	FBtr0301731	5701	1550aa	FBpp0290945	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V2Z1 B7VEK2	NM_001170150.3 NM_001170152.2 NM_169673 NM_169673.3 NP_001163621.1 NP_001163623.1 NP_732070 NP_732070.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
nsl1-RK	FBtr0309859	5172	982aa	FBpp0301593	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K6I8	NM_001260194 NM_001260194.2 NP_001247123 NP_001247123.1	-
nsl1-RN	FBtr0309862	5159	1569aa	FBpp0301596	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K663	NM_001260196 NM_001260196.2 NP_001247125 NP_001247125.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
nsl1-RD	FBtr0301726	5102	1550aa	FBpp0290940	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V2Z1	NM_001170150 NM_001170150.3 NM_001170152.2 NM_169673.3 NP_001163621 NP_001163621.1 NP_001163623.1 NP_732070.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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Gene-based displays