chascon
Primary_assembly X: 17,672,458-17,698,730 reverse strand.
BDGP6.32:AE014298.5
This gene has 5 transcripts (splice variants) and 78 orthologues.
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | UniProt | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|
| chas-RD | FBtr0340635 | 5746 | 1558aa | FBpp0309499 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | X2JE77 | NM_001298452 NM_001298452.1 NP_001285381 NP_001285381.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| chas-RA | FBtr0074477 | 5224 | 1359aa | FBpp0074251 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q7YU70 Q8MT64 Q9VX26 | NM_001298451.1 NM_167574 NM_167574.2 NP_001285380.1 NP_728092 NP_728092.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| chas-RE | FBtr0340636 | 5219 | 1031aa | FBpp0309500 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q7KUW6 | NM_001298453 NM_001298453.1 NM_206773.2 NP_001285382 NP_001285382.1 NP_996496.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| chas-RC | FBtr0340634 | 5175 | 1359aa | FBpp0309498 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9VX26 | NM_001298451 NM_001298451.1 NM_167574.2 NP_001285380 NP_001285380.1 NP_728092.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| chas-RB | FBtr0074478 | 4682 | 1031aa | FBpp0074252 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q7KUW6 | NM_001298453.1 NM_206773 NM_206773.2 NP_001285382.1 NP_996496 NP_996496.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
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