Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
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- Gene tree (Metazoa)
- Gene tree (Protostomes)
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- Gene gain/loss tree
- Orthologues
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Pan-taxonomic Compara
- Gene Tree
- Orthologues
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Genetic Variation
- Variant table
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DB built by FlyBase

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Gene: CG42784 FBgn0263354

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Location

Primary_assembly 2L: 13,415,431-13,500,427 forward strand.

BDGP6.46:AE014134.6

About this gene

This gene has 4 transcripts (splice variants) and 11 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG42784-RF	FBtr0308949	6640	984aa	FBpp0301048	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9MRJ1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG42784-RJ	FBtr0347401	5405	648aa	FBpp0312551	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4STL4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG42784-RD	FBtr0347400	5345	628aa	FBpp0312550	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NDP3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG42784-RC	FBtr0303440	3621	596aa	FBpp0292497	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VJX4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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