Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
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- Gene gain/loss tree
- Orthologues
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Pan-taxonomic Compara
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- Orthologues
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Genetic Variation
- Variant table
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Supporting evidence
ID History
- Gene history

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DB built by FlyBase

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Gene: Vsx1 FBgn0263511

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Description

Visual system homeobox 1

Location

Primary_assembly X: 5,594,255-5,612,865 forward strand.

BDGP6.32:AE014298.5

About this gene

This gene has 2 transcripts (splice variants), 109 orthologues and 27 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Vsx1-RB	FBtr0340495	3633	837aa	FBpp0309431	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W4B2	NM_001297969 NM_001297969.1 NM_132004.3 NP_001284898 NP_001284898.1 NP_572232.2	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS P1
Vsx1-RA	FBtr0070781	2983	837aa	FBpp0070747	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5U1D9 Q8T990 Q9W4B2	NM_001297969.1 NM_132004 NM_132004.3 NP_001284898.1 NP_572232 NP_572232.2	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS P1

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Summary

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Gene-based displays