Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

DB built by FlyBase

.

Gene: cpo FBgn0263995

.

Description

couch potato

Gene Synonyms

Location

Primary_assembly 3R: 17,919,832-18,018,892 forward strand.

BDGP6.32:AE014297.3

About this gene

This gene has 12 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
cpo-RS	FBtr0330274	9229	962aa	FBpp0303306	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D2NUI7 M1KNR7 M1KNS7	NM_001014632 NP_001014632	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
cpo-RT	FBtr0330275	9743	607aa	FBpp0303307	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	NM_001014631 NM_001014631.3 NM_001170169.3 NP_001014631 NP_001014631.3 NP_001163640.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
cpo-RO	FBtr0330270	9118	748aa	FBpp0303302	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KGV8 M1KP51	NM_001275759 NM_001275759.1 NP_001262688 NP_001262688.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
cpo-RV	FBtr0330277	8397	607aa	FBpp0303309	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M1L9Z9 M1LED9 M1LGU0	NM_001014631.3 NM_001170169 NM_001170169.3 NP_001014631.3 NP_001163640 NP_001163640.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
cpo-RR	FBtr0330273	7247	749aa	FBpp0303305	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M1KNG5 M1KNL9	NM_169781 NP_732282	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
cpo-RY	FBtr0330280	6131	606aa	FBpp0303312	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KGD8 M1KP99 M1L961 M1L9L4 M1L9Z9 M1LDX6 M1LE62 Q01617	NM_001014631.3 NM_001014632.4 NM_001170169.3 NM_001275762.1 NM_001275763.1 NM_080105 NM_080105.4 NM_169781.4 NM_169782.3 NM_169783.4 NP_001014631.3 NP_001014632.3 NP_001163640.2 NP_001262691.1 NP_001262692.1 NP_524844 NP_524844.6 NP_732282.6 NP_732283.5 NP_732284.5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
cpo-RX	FBtr0330279	6116	606aa	FBpp0303311	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KGD8 Q01617	NM_001014631.3 NM_001014632.4 NM_001170169.3 NM_001275762.1 NM_001275763 NM_001275763.1 NM_080105.4 NM_169781.4 NM_169782.3 NM_169783.4 NP_001014631.3 NP_001014632.3 NP_001163640.2 NP_001262691.1 NP_001262692 NP_001262692.1 NP_524844.6 NP_732282.6 NP_732283.5 NP_732284.5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
cpo-RN	FBtr0330269	5675	606aa	FBpp0303301	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KGD8 Q01617	NM_001014631.3 NM_001014632.4 NM_001170169.3 NM_001275762.1 NM_001275763.1 NM_080105.4 NM_169781.4 NM_169782.3 NM_169783 NM_169783.4 NP_001014631.3 NP_001014632.3 NP_001163640.2 NP_001262691.1 NP_001262692.1 NP_524844.6 NP_732282.6 NP_732283.5 NP_732284 NP_732284.5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
cpo-RP	FBtr0330271	5461	841aa	FBpp0303303	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KHP4	NM_001275760 NM_001275760.1 NP_001262689 NP_001262689.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
cpo-RU	FBtr0330276	5086	606aa	FBpp0303308	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KGD8 Q01617	NM_001014631.3 NM_001014632.4 NM_001170169.3 NM_001275762.1 NM_001275763.1 NM_080105.4 NM_169781.4 NM_169782 NM_169782.3 NM_169783.4 NP_001014631.3 NP_001014632.3 NP_001163640.2 NP_001262691.1 NP_001262692.1 NP_524844.6 NP_732282.6 NP_732283 NP_732283.5 NP_732284.5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
cpo-RQ	FBtr0330272	4524	762aa	FBpp0303304	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KHB6 M1KNR7 M1KNS7 M1KP51 M1KP83	NM_001275761 NM_001275761.1 NP_001262690 NP_001262690.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
cpo-RW	FBtr0330278	4469	606aa	FBpp0303310	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KGD8 Q01617	NM_001014631.3 NM_001014632.4 NM_001170169.3 NM_001275762 NM_001275762.1 NM_001275763.1 NM_080105.4 NM_169781.4 NM_169782.3 NM_169783.4 NP_001014631.3 NP_001014632.3 NP_001163640.2 NP_001262691 NP_001262691.1 NP_001262692.1 NP_524844.6 NP_732282.6 NP_732283.5 NP_732284.5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

.

Summary

.

.

Gene-based displays