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DB built by FlyBase

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Gene: Ca-alpha1T FBgn0264386

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Description

Ca[2+]-channel protein alpha[[1]] subunit T

Gene Synonyms

Location

Primary_assembly X: 6,104,085-6,192,483 reverse strand.

BDGP6.46:AE014298.5

About this gene

This gene has 5 transcripts (splice variants), 97 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Ca-alpha1T-RF	FBtr0334984	13025	3218aa	FBpp0306997	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PGH9	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Ca-alpha1T-RC	FBtr0112953	10893	3205aa	FBpp0111866	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8JUY8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Ca-alpha1T-RE	FBtr0304610	10878	3200aa	FBpp0293152	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NDQ0 Q963J1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Ca-alpha1T-RB	FBtr0089393	10842	3188aa	FBpp0088415	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q963J2 Q9W433	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Ca-alpha1T-RD	FBtr0304609	10818	3180aa	FBpp0293151	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NGR9 Q6IIM1 Q963J0 Q963J2 Q967R3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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