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DB built by FlyBase

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Gene: koko FBgn0264816

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Description

kokopelli

Gene Synonyms

Location

Primary_assembly 3R: 18,403,026-18,404,726 forward strand.

BDGP6.32:AE014297.3

About this gene

This gene has 4 transcripts (splice variants), 121 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
koko-RB	FBtr0334146	1279	259aa	FBpp0306263	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VE72	NM_169811 NM_169811.3 NM_169812.3 NM_169813.3 NM_169814.3 NP_732338 NP_732338.1 NP_732339.1 NP_732340.1 NP_732341.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
koko-RC	FBtr0334147	1247	259aa	FBpp0306264	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VE72	NM_169811.3 NM_169812 NM_169812.3 NM_169813.3 NM_169814.3 NP_732338.1 NP_732339 NP_732339.1 NP_732340.1 NP_732341.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
koko-RD	FBtr0334148	1177	259aa	FBpp0306265	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VE72	NM_169811.3 NM_169812.3 NM_169813 NM_169813.3 NM_169814.3 NP_732338.1 NP_732339.1 NP_732340 NP_732340.1 NP_732341.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
koko-RE	FBtr0334149	1122	259aa	FBpp0306266	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6NL76 Q7YU34 Q8IG98 Q961G6 Q9VE72	NM_169811.3 NM_169812.3 NM_169813.3 NM_169814 NM_169814.3 NP_732338.1 NP_732339.1 NP_732340.1 NP_732341 NP_732341.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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Gene-based displays