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DB built by FlyBase

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Gene: pHCl-1 FBgn0264908

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Description

pH-sensitive chloride channel 1

Gene Synonyms

Location

Primary_assembly 3L: 15,848,578-15,899,029 reverse strand.

BDGP6.32:AE014296.5

About this gene

This gene has 17 transcripts (splice variants), 121 orthologues and 21 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
pHCl-1-RN	FBtr0334981	6629	978aa	FBpp0306994	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PI70 Q5D6V9	NM_001274969 NM_001274969.1 NP_001261898 NP_001261898.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
pHCl-1-RL	FBtr0334979	5941	747aa	FBpp0306992	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PFR7	NM_001274967 NM_001274967.1 NP_001261896 NP_001261896.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
pHCl-1-RM	FBtr0334980	3818	954aa	FBpp0306993	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PFL8	NM_001274968 NM_001274968.1 NP_001261897 NP_001261897.1	-
pHCl-1-RO	FBtr0334982	3743	929aa	FBpp0306995	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PCN5	NM_001274970 NM_001274970.1 NP_001261899 NP_001261899.1	-
pHCl-1-RG	FBtr0334976	3687	681aa	FBpp0306989	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AVU9 E1JI08 Q5D6W0	NM_001169979 NM_001169979.1 NP_001163450 NP_001163450.1	-
pHCl-1-RC	FBtr0334972	3361	637aa	FBpp0306985	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VUV3	NM_001038937 NM_001038937.2 NP_001034026 NP_001034026.1	-
pHCl-1-RF	FBtr0334975	3293	779aa	FBpp0306988	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q2PDY9	NM_001038935 NM_001038935.3 NP_001034024 NP_001034024.2	-
pHCl-1-RJ	FBtr0334977	3277	772aa	FBpp0306990	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PCN0	NM_001274965 NM_001274965.1 NP_001261894 NP_001261894.1	-
pHCl-1-RS	FBtr0474160	3277	774aa	FBpp0423159	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4D6K8E5	NM_001370024	-
pHCl-1-RT	FBtr0474161	3271	770aa	FBpp0423160	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2JCG3	NM_001370025	-
pHCl-1-RH	FBtr0334971	3247	762aa	FBpp0306984	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NEB0	NM_001259852 NM_001259852.1 NP_001246781 NP_001246781.1	-
pHCl-1-RE	FBtr0334974	3239	762aa	FBpp0306987	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q2PDZ0	NM_001038936 NM_001038936.4 NP_001034025 NP_001034025.2	-
pHCl-1-RU	FBtr0474162	3226	755aa	FBpp0423161	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2JGQ0	NM_001370026	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
pHCl-1-RI	FBtr0334970	3223	754aa	FBpp0306983	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NFY2	NM_001259853 NM_001259853.1 NP_001246782 NP_001246782.1	-
pHCl-1-RP	FBtr0334983	3218	754aa	FBpp0306996	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PFD7	NM_001274971 NM_001274971.1 NP_001261900 NP_001261900.1	-
pHCl-1-RK	FBtr0334978	3199	746aa	FBpp0306991	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PFD4	NM_001274966 NM_001274966.1 NP_001261895 NP_001261895.1	-
pHCl-1-RD	FBtr0334973	3164	737aa	FBpp0306986	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VUV2	NM_001038934 NM_001038934.4 NP_001034023 NP_001034023.2	-

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Summary

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Gene-based displays