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DB built by FlyBase

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Gene: Irk1 FBgn0265042

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Description

Inwardly rectifying potassium channel 1

Gene Synonyms

Location

Primary_assembly 3R: 23,168,317-23,185,642 forward strand.

BDGP6.46:AE014297.3

About this gene

This gene has 7 transcripts (splice variants), 115 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Irk1-RF	FBtr0336477	3188	652aa	FBpp0307580	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KH86	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Irk1-RE	FBtr0336474	3202	540aa	FBpp0307577	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4JCZ2	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Irk1-RG	FBtr0336478	2910	652aa	FBpp0307581	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KH86 A2RVG0 Q95UP7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Irk1-RB	FBtr0336473	2813	555aa	FBpp0307576	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8JR87	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Irk1-RH	FBtr0336479	2716	526aa	FBpp0307582	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JIU2	-	-
Irk1-RC	FBtr0336476	2213	526aa	FBpp0307579	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2RVC9 C9QPA7 E1JIU2	-	-
Irk1-RD	FBtr0336475	2202	532aa	FBpp0307578	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VCQ0	-	-

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Summary

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