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DB built by FlyBase

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Gene: Spn42Da FBgn0265137

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Description

Serpin 42Da

Gene Synonyms

Location

Primary_assembly 2R: 6,875,906-6,878,927 reverse strand.

BDGP6.46:AE013599.5

About this gene

This gene has 11 transcripts (splice variants), 26 orthologues and 28 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Spn42Da-RB	FBtr0086196	1385	424aa	FBpp0085523	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7K8Y5	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Spn42Da-RL	FBtr0300336	2155	379aa	FBpp0289565	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MM39	-	-
Spn42Da-RK	FBtr0086205	1789	379aa	FBpp0089206	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MM39	-	-
Spn42Da-RH	FBtr0086202	1763	379aa	FBpp0089193	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MM39	-	-
Spn42Da-RF	FBtr0086200	1669	411aa	FBpp0089191	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MM49 Q8T0M5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Spn42Da-RG	FBtr0086201	1651	379aa	FBpp0089192	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MPN6	-	-
Spn42Da-RE	FBtr0086199	1643	411aa	FBpp0089190	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MM49	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Spn42Da-RD	FBtr0086198	1531	411aa	FBpp0089189	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MPN8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Spn42Da-RA	FBtr0086197	1505	392aa	FBpp0085524	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7K8Y3 Q9U1I5	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Spn42Da-RJ	FBtr0086204	1490	374aa	FBpp0089208	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MPN5	-	-
Spn42Da-RI	FBtr0086203	1370	406aa	FBpp0089207	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MPN7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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