Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Regulation
External references
Supporting evidence
ID History
- Gene history

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DB built by FlyBase

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Gene: Snp FBgn0265192

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Description

Snipper

Gene Synonyms

Location

Primary_assembly 2R: 22,060,950-22,069,757 forward strand.

BDGP6.32:AE013599.5

About this gene

This gene has 4 transcripts (splice variants) and 120 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Snp-RD	FBtr0339099	1899	281aa	FBpp0308244	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8WHF7 Q95RQ4	NM_137788 NM_137788.4 NP_611632 NP_611632.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Snp-RG	FBtr0339102	1667	223aa	FBpp0308247	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W2A1	NM_166501.3 NM_166502.3 NM_166503 NM_166503.3 NP_726149.1 NP_726150.1 NP_726151 NP_726151.3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Snp-RE	FBtr0339100	1578	223aa	FBpp0308245	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W2A1	NM_166501.3 NM_166502 NM_166502.3 NM_166503.3 NP_726149.1 NP_726150 NP_726150.1 NP_726151.3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Snp-RF	FBtr0339101	1419	223aa	FBpp0308246	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W2A1	NM_166501 NM_166501.3 NM_166502.3 NM_166503.3 NP_726149 NP_726149.1 NP_726150.1 NP_726151.3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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