Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
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Literature
Metazoan Compara
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- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
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Pan-taxonomic Compara
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Genetic Variation
- Variant table
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DB built by FlyBase

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Gene: sima FBgn0266411

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Description

similar

Gene Synonyms

Location

Primary_assembly 3R: 30,058,311-30,121,798 forward strand.

BDGP6.46:AE014297.3

About this gene

This gene has 4 transcripts (splice variants), 57 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
sima-RD	FBtr0344376	5978	1593aa	FBpp0310749	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LIX2	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
sima-RA	FBtr0344374	6178	1507aa	FBpp0310747	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B9ER22 Q24167 Q5U0W0 Q8MQV4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
sima-RC	FBtr0344373	4704	869aa	FBpp0310746	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KHI3	-	-
sima-RB	FBtr0344375	3543	426aa	FBpp0310748	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z0S3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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