Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
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Genetic Variation
- Variant table
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- Structural variants
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ID History
- Gene history

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DB built by FlyBase

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Gene: CG46025 FBgn0267689

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Location

Primary_assembly 2L: 7,754,174-7,765,915 forward strand.

BDGP6.46:AE014134.6

About this gene

This gene has 5 transcripts (splice variants) and 13 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG46025-RD	FBtr0347190	2435	596aa	FBpp0312501	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0S0WNI0	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG46025-RC	FBtr0347187	2036	441aa	FBpp0312498	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8T3J9	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
CG46025-RA	FBtr0347188	1837	441aa	FBpp0312499	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8T3J9	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
CG46025-RE	FBtr0475046	1604	417aa	FBpp0423260	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6H2EHB2	-	-
CG46025-RB	FBtr0347189	1083	209aa	FBpp0312500	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8I0H4	-	-

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Summary

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