Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
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Pan-taxonomic Compara
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DB built by FlyBase

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Gene: scb FBgn0286785

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Description

scab

Gene Synonyms

Location

Primary_assembly 2R: 15,248,784-15,258,498 forward strand.

BDGP6.32:AE013599.5

About this gene

This gene has 2 transcripts (splice variants), 165 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
scb-RB	FBtr0087369	4643	1115aa	FBpp0086501	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O44386	NM_079026 NM_079026.3 NM_166083.2 NP_523750 NP_523750.2 NP_725445.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
scb-RA	FBtr0087370	4304	1115aa	FBpp0086502	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	NM_166083 NM_166083.2 NP_725445 NP_725445.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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