Summary
- Splice variants
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Metazoan Compara
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Pan-taxonomic Compara
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- GO: Biological process
- GO: Molecular function
- GO: Cellular component
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DB built by FlyBase

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Gene: Csp FBgn0004179

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Description

Cysteine string protein

Gene Synonyms

Location

Primary_assembly 3L: 22,267,382-22,273,745 forward strand.

BDGP6.32:AE014296.5

About this gene

This gene has 6 transcripts (splice variants), 113 orthologues and 12 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Csp-RF	FBtr0344983	2028	249aa	FBpp0311238	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D0IQJ8	NM_001300215 NM_001300215.1 NM_168949.2 NP_001287144 NP_001287144.1 NP_730713.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Csp-RE	FBtr0334747	2895	244aa	FBpp0306788	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PG83	NM_001275277.1 NM_001275278 NM_001275278.1 NP_001262206.1 NP_001262207 NP_001262207.1	-
Csp-RA	FBtr0078493	2832	223aa	FBpp0078145	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	NM_079489 NP_524213	-
Csp-RC	FBtr0078495	2226	228aa	FBpp0078147	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C5WLN6	NM_168950 NM_168950.4 NP_730714 NP_730714.2	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Csp-RB	FBtr0078494	1842	249aa	FBpp0078146	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D0IQJ8 Q03751	NM_001300215.1 NM_168949 NM_168949.2 NP_001287144.1 NP_730713 NP_730713.1	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Csp-RD	FBtr0334746	1498	244aa	FBpp0306787	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PG83	NM_001275277 NM_001275277.1 NM_001275278.1 NP_001262206 NP_001262206.1 NP_001262207.1	-

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Summary

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Gene-based displays