Ribonuclear protein at 97D
Primary_assembly 3R: 26,872,129-26,875,742 reverse strand.
BDGP6.32:AE014297.3
This gene has 9 transcripts (splice variants), 38 orthologues and 17 paralogues.
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | UniProt | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|
| Rb97D-RB | FBtr0085093 | 3101 | 471aa | FBpp0084463 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A4V3H1 Q02926 | NM_001014671.2 NM_001014672.2 NM_001014673.2 NM_001014674.2 NM_001014675.2 NM_001014676.2 NM_001014677.2 NM_079796 NM_079796.5 NM_170293.3 NP_001014671.1 NP_001014672.1 NP_001014673.1 NP_001014674.1 NP_001014675.1 NP_001014676.1 NP_001014677.1 NP_524520 NP_524520.1 NP_733172.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| Rb97D-RI | FBtr0100340 | 2828 | 471aa | FBpp0099745 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A4V3H1 Q02926 | NM_001014671 NM_001014671.2 NM_001014672.2 NM_001014673.2 NM_001014674.2 NM_001014675.2 NM_001014676.2 NM_001014677.2 NM_079796.5 NM_170293.3 NP_001014671 NP_001014671.1 NP_001014672.1 NP_001014673.1 NP_001014674.1 NP_001014675.1 NP_001014676.1 NP_001014677.1 NP_524520.1 NP_733172.1 | APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| Rb97D-RG | FBtr0100338 | 2810 | 465aa | FBpp0099743 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A4V3G9 | NM_001014673 NM_001014673.2 NM_001014677.2 NM_170293.3 NP_001014673 NP_001014673.1 NP_001014677.1 NP_733172.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Rb97D-RD | FBtr0100335 | 2633 | 434aa | FBpp0099740 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q59DT6 Q6NR27 | NM_001014675.2 NM_001014676 NM_001014676.2 NP_001014675.1 NP_001014676 NP_001014676.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Rb97D-RA | FBtr0085092 | 2629 | 465aa | FBpp0084462 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A4V3G9 | NM_001014673.2 NM_001014677.2 NM_170293 NM_170293.3 NP_001014673.1 NP_001014677.1 NP_733172 NP_733172.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Rb97D-RF | FBtr0100337 | 2524 | 471aa | FBpp0099742 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A4V3H1 Q02926 | NM_001014671.2 NM_001014672.2 NM_001014673.2 NM_001014674 NM_001014674.2 NM_001014675.2 NM_001014676.2 NM_001014677.2 NM_079796.5 NM_170293.3 NP_001014671.1 NP_001014672.1 NP_001014673.1 NP_001014674 NP_001014674.1 NP_001014675.1 NP_001014676.1 NP_001014677.1 NP_524520.1 NP_733172.1 | APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| Rb97D-RE | FBtr0100336 | 2510 | 434aa | FBpp0099741 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q59DT6 | NM_001014675 NM_001014675.2 NM_001014676.2 NP_001014675 NP_001014675.1 NP_001014676.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Rb97D-RC | FBtr0100334 | 2506 | 465aa | FBpp0099739 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A4V3G9 | NM_001014673.2 NM_001014677 NM_001014677.2 NM_170293.3 NP_001014673.1 NP_001014677 NP_001014677.1 NP_733172.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Rb97D-RH | FBtr0100339 | 2094 | 471aa | FBpp0099744 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A4V3H1 Q02926 | NM_001014671.2 NM_001014672 NM_001014672.2 NM_001014673.2 NM_001014674.2 NM_001014675.2 NM_001014676.2 NM_001014677.2 NM_079796.5 NM_170293.3 NP_001014671.1 NP_001014672 NP_001014672.1 NP_001014673.1 NP_001014674.1 NP_001014675.1 NP_001014676.1 NP_001014677.1 NP_524520.1 NP_733172.1 | APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
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