Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
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Pan-taxonomic Compara
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- Orthologues
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Genetic Variation
- Variant table
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DB built by FlyBase

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Gene: SERCA FBgn0263006

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Description

Sarco/endoplasmic reticulum Ca(2+)-ATPase

Gene Synonyms

Location

Primary_assembly 2R: 23,925,077-23,935,884 reverse strand.

BDGP6.32:AE013599.5

About this gene

This gene has 9 transcripts (splice variants), 135 orthologues and 9 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
SERCA-RH	FBtr0072216	5028	1020aa	FBpp0072125	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E8NHA8 P22700	NM_057484.3 NM_166633.2 NM_166634.2 NM_166635.2 NM_166636.2 NM_166637.2 NM_166638.2 NM_166639 NM_166639.2 NP_476832.1 NP_726381.1 NP_726382.1 NP_726383.1 NP_726384.1 NP_726385.1 NP_726386.1 NP_726387 NP_726387.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
SERCA-RI	FBtr0343281	6306	999aa	FBpp0309946	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LGB7	NM_001299867 NM_001299867.1 NP_001286796 NP_001286796.1	-
SERCA-RA	FBtr0072215	3890	1002aa	FBpp0072124	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	NM_057484 NM_057484.3 NP_476832 NP_476832.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
SERCA-RF	FBtr0072218	3839	1020aa	FBpp0072127	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E8NHA8 P22700	NM_057484.3 NM_166633.2 NM_166634.2 NM_166635.2 NM_166636.2 NM_166637 NM_166637.2 NM_166638.2 NM_166639.2 NP_476832.1 NP_726381.1 NP_726382.1 NP_726383.1 NP_726384.1 NP_726385 NP_726385.1 NP_726386.1 NP_726387.1	-
SERCA-RC	FBtr0072217	3395	1020aa	FBpp0072126	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E8NHA8 P22700	NM_057484.3 NM_166633.2 NM_166634 NM_166634.2 NM_166635.2 NM_166636.2 NM_166637.2 NM_166638.2 NM_166639.2 NP_476832.1 NP_726381.1 NP_726382 NP_726382.1 NP_726383.1 NP_726384.1 NP_726385.1 NP_726386.1 NP_726387.1	-
SERCA-RB	FBtr0072213	3385	1020aa	FBpp0072122	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E8NHA8 P22700	NM_057484.3 NM_166633 NM_166633.2 NM_166634.2 NM_166635.2 NM_166636.2 NM_166637.2 NM_166638.2 NM_166639.2 NP_476832.1 NP_726381 NP_726381.1 NP_726382.1 NP_726383.1 NP_726384.1 NP_726385.1 NP_726386.1 NP_726387.1	-
SERCA-RE	FBtr0072212	3310	1020aa	FBpp0072121	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E8NHA8 P22700	NM_057484.3 NM_166633.2 NM_166634.2 NM_166635.2 NM_166636 NM_166636.2 NM_166637.2 NM_166638.2 NM_166639.2 NP_476832.1 NP_726381.1 NP_726382.1 NP_726383.1 NP_726384 NP_726384.1 NP_726385.1 NP_726386.1 NP_726387.1	-
SERCA-RG	FBtr0072211	3269	1020aa	FBpp0072120	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E8NHA8 P22700	NM_057484.3 NM_166633.2 NM_166634.2 NM_166635.2 NM_166636.2 NM_166637.2 NM_166638 NM_166638.2 NM_166639.2 NP_476832.1 NP_726381.1 NP_726382.1 NP_726383.1 NP_726384.1 NP_726385.1 NP_726386 NP_726386.1 NP_726387.1	-
SERCA-RD	FBtr0072214	3259	1020aa	FBpp0072123	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E8NHA8 P22700	NM_057484.3 NM_166633.2 NM_166634.2 NM_166635 NM_166635.2 NM_166636.2 NM_166637.2 NM_166638.2 NM_166639.2 NP_476832.1 NP_726381.1 NP_726382.1 NP_726383 NP_726383.1 NP_726384.1 NP_726385.1 NP_726386.1 NP_726387.1	-

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Summary

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Gene-based displays