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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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DB built by FlyBase

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Gene: squ FBgn0267347

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Description

squash

Gene Synonyms

Location

Primary_assembly 2L: 16,680,054-16,681,653 forward strand.

BDGP6.46:AE014134.6

About this gene

This gene has 3 transcripts (splice variants), 5 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
squ-RA	FBtr0080887	1372	241aa	FBpp0099829	Gene/transcipt that contains an open reading frame (ORF).Protein coding	L0CPL1 L0CPT7 L0CQV7 L0CQW1 L0CRB3 L0CRL1 L0CRL5 L0CRL9 L0CRM7 Q7KT57	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
squ-RC	FBtr0335140	1171	241aa	FBpp0307139	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KT57	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
squ-RB	FBtr0305565	1029	241aa	FBpp0294016	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KT57	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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